Welcome to IsobaricQuant’s documentation!

Contents:

• Introduction
• Getting started
  • Dependencies
    • Microsoft Windows
    • Linux
    • macOS
  • Installation
  • How to run IsobaricQuant?
    • IsobaricQuant CLI mode
    • IsobaricQuant GUI mode
  • Input Files
    • Configuration file
    • Mz File
    • Hits file
  • Output Files
    • isofrag.csv
    • isolab.csv
    • isopep.csv
    • isopep_extra.csv
• Test files
• Algorithm
  • Noise
  • Excluded Peaks
• MSN Scores
  • ScoreType.ISOTOPE_DISTRIBUTION
  • ScoreType.REPORTERS_INTENSITY
  • ScoreType.REPORTERS_FOUND
  • Precursor signal percentage
  • Precursor weighted signal
• MS2 scores
  • Peptide Intensity Score
  • Peptide Top X Intensity Score
  • Top X Intensity From Total Score
  • Peptide Top X Intensity From Total Score
  • Top Peak Intensity Score
  • Top Peak Intensity Top X Score
  • Top Peak From Peptide
  • Top Peak From Peptide Neutral Loss
  • Top Peak Mass
  • msnTotalSignal
  • precTotalSignal
  • totalSignalSPSWind
  • precTPIntRatio
  • precRepIntRatio
  • precTPNumRatio
• MS3 scores
  • Definitions
    • Precursors
    • Precursors intensities
    • Peptide Fragment ions
    • Precursors matching BY intensities
    • Precursors window intensities
  • MSN Total signal
  • Precursor total signal
  • Total signal SPS window
  • precTPIntRatio
  • precRepIntRatio
  • precTPNumRatio